Environmental Data: Simulated and observed prevalence of dispersal-rel...
Description
This dataset contains all data and R codes (R Development Core Team, https://www.R-project.org) used in the following publication: Donati GFA, Parravicini ...
Citation
Donati, G. F. A., Parravicini, V., Leprieur, F., Hagen, O., Gaboriau, T., Heine, C., Kulbicki, M., Rolland, J., Salamin, N., Albouy, C., Pellissier, L. (2019). Simulated and observed prevalence of dispersal-related traits in tropical reef fish assemblages worldwide. EnviDat. https://www.doi.org/10.16904/envidat.85.
Resources
Global species distribution of tropical reef fish species
Each species corresponds to a "Gaspar_code" gathered from the General Approach to Species Abundance Relationships (GASPAR) database (Kulbicki et al. 2013, Parravicini et al. 2013) and is linked to a specific Fishned ID corresponding to a specific Latitude and Longitude.
Global species distribution of tropical reef fish speciesDispersal parameter value d per simulation
Dispersal parameter value d per simulation starting with a minimum dispersal value, where each species is able to colonise each adjacent cell, and ending with the value of d for which all the extant habitats, including the most remote Pacific islands, have been colonised (d ∈ [1.75°: 5.45°]).
Dispersal parameter value d per simulationGlobal simulated distribution of species under a range of dispersal parameter values
Global distribution of simulated species richness under a range of dispersal parameter values d d ∈ [1.75°: 5.45°].
Global simulated distribution of species under a range of dispersal parameter valuesCoral reef grid cells (shape, dbf, etc. files)
Grid cells of 5 × 5°, corresponding to circa 555 × 555 km at the Equator (see Parravicini et al. 2013, Leprieur et al. 2016) Parravicini, V. et al. 2013. Global patterns and predictors of tropi- cal reef sh species richness. – Ecography 36: 1254–1262. Leprieur, F. et al. 2016. Plate tectonics drive tropical reef biodiver- sity dynamics. – Nat. Commun. 7: 11461.
Coral reef grid cells (shape, dbf, etc. files)Global coast files from https://www.ngdc.noaa.gov/mgg/shorelines/gshhs.html
Global coast files from https://www.ngdc.noaa.gov/mgg/shorelines/gshhs.html used in the Figures
Global coast files from https://www.ngdc.noaa.gov/mgg/shorelines/gshhs.htmlSimulated rates of speciation and extinction under a range of dispersal parameters.
Simulated rates of speciation and extinction under a range of dispersal parameters. Net diversification rates are calculated from the difference between speciation and extinction rates. This data allows the creation of Figure A4 in Supporting information, Appendix 1.
Simulated rates of speciation and extinction under a range of dispersal parameters.Input for spatial congruence test overlap between proportions of low and high dispersal and observed low- and high- dispersal-related traits in assemblages (30-50% threshold). see Table 2.
Input for the Global distribution maps for proportions of species richness for (a) simulated dispersal parameter value (b) observed dispersal-related traits
Geographic distribution data (species richness and proportions of high/low dispersal-related traits) on predominantly low dispersing and high dispersing species expected based on the simulations, and those where low- and high- dispersal related traits values are observed for the five investigated traits.
Input for the Global distribution maps for proportions of species richness for (a) simulated dispersal parameter value (b) observed dispersal-related traitsFunctions used in R scripts in: Donati et al. 2019 "A process-based-model supports an association between # dispersal and the prevalence of species traits in tropical reef fish assemblages" accepted in Ecography, August 2019
Functions for Figures illustrated in Donati et al. 2019 "A process-based-model supports an association between dispersal and the prevalence of species traits in tropical reef fish assemblages" accepted in Ecography, August 2019.
Functions used in R scripts in: Donati et al. 2019 "A process-based-model supports an association between # dispersal and the prevalence of species traits in tropical reef fish assemblages" accepted in Ecography, August 2019Donati et al. main script
Main script used in : Donati et al. 2019 "A process-based-model supports an association between dispersal and the prevalence of species traits in tropical reef fish assemblages" accepted in Ecography, August 2019
Donati et al. main scriptMain text figures
R Script used for figures in main text in: Donati et al. 2019: "A process-based-model supports an association between dispersal and the prevalence of species traits in tropical reef fish assemblages" accepted in Ecography, August 2019.
Main text figuresSupplementary material Appendix 1 Figures
Supplementary material Appendix 1 Figures illustrated in Donati et al. 2019 "A process-based-model supports an association between dispersal and the prevalence of species traits in tropical reef fish assemblages". accepted in Ecography, August 2019
Supplementary material Appendix 1 FiguresTropical reef fish trait data
Species trait (i.e. adult body size, home range mobility behaviour, circadian activity and schooling) data gathered from the General Approach to Species Abundance Relationships (GASPAR) database (Kulbicki et al. 2013, Parravicini et al. 2013). Kulbicki, M. et al. 2013. Global biogeography of reef shes: a hier- archical quantitative delineation of regions. – PLoS One 8: e81847. Parravicini, V. et al. 2013. Global patterns and predictors of tropi- cal reef sh species richness. – Ecography 36: 1254–1262. To complement the trait data with Pelagic Larval Duration information refer to the following publication: Luiz, Osmar J., et al. "Adult and larval traits as determinants of geographic range size among tropical reef fishes." Proceedings of the National Academy of Sciences 110.41 (2013): 16498-16502. In Donati et al. "A process-based model supports an association between dispersal and the prevalence of species traits in tropical reef fish assemblages" accepted in Ecography in August 2019, we used the PLD gathered from Luiz et al. 2013 as described in the methods - section "Species trait data".
Tropical reef fish trait data