Environmental Data: Application of CRISPR-Dx and metabarcoding to catc...

Keywords:
CATCHMENT
CRISPR-DX
DNA METABARCODING
EDNA
MAMMALS
METABARCODING
NATIONAL PARK
Keywords:
CATCHMENT
CRISPR-DX
DNA METABARCODING
EDNA
MAMMALS
METABARCODING
NATIONAL PARK

Description

# General description Data associated with the publication "CRISPR-Dx and metabarcoding perform similarly for monitoring mammals with eDNA on the catchm...

Citation

Leugger, F., Lüthi, M., Schmidlin, M., Turnheer, S., Kontarakis, Z., Pellissier, L. (2025). Application of CRISPR-Dx and metabarcoding to catchment-level eDNA for terrestrial mammal detection. EnviDat. https://www.doi.org/10.16904/envidat.661.

Resources

  • Readme.txt

    Read me file with information about files within this repository

    Readme.txt

  • catchments.zip

    Shape file containing the catchments sampled in the Swiss National Park

    catchments.zip

  • data.zip

    Folder containing a folder for eDNA and species_inventory (traditional monitoring), respectively. eDNA folder: CRISPR_classifications.csv: CRISPR-Dx classifications per extract (and PCR pool). metabarcoding_seqs_all_cleaned.csv: all DNA sequences from metabarcoding after removing all sequences found in the negative controls. species_inventory: species per catchment reported by the Swiss National Park, based on traditional monitoring including. visual surveys and other opportunistic records. 2: known presence in 2022, 1: maybe present in 2022, 0: not recorded in 2022

    data.zip

  • metadata.zip

    Folder containing files with overview of site names and extract number. Second file with metadata per site (e..g., sampling date). Column called "EVS" (Environmental sample) is the key between the two files.

    metadata.zip