doi:10.16904/envidat.85
Eng
MD_CharacterSetCode_utf8
Giulia Francesca Azzurra Donati
eawag
giulia.donati@eawag.ch
2019-09-09T14:15:41
ISO 19115:2003/19139
1.0
EPSG:4326
Simulated and observed prevalence of dispersal-related traits in tropical reef fish assemblages worldwide
2019-12-31
This dataset contains all data and R codes (R Development Core Team, https://www.R-project.org) used in the following publication: Donati GFA, Parravicini V, Leprieur F, Hagen O, Gaboriau T, Heine C, Kulbicki M, Rolland J, Salamin N, Albouy C, Pellissier L. "A process-based model supports an association between dispersal and the prevalence of species traits in tropical reef fish assemblages" accepted by Ecography in August 2019. When using this data and R scripts the above publication should be cited. The interaction of habitat dynamics with species dispersal abilities could generate gradients in species diversity and prevalence of life-history and ecological traits, when the latter are associated with dispersal potential. In this dataset, we use a spatial mechanistic model of speciation, extinction and dispersal, constrained by a dispersal parameter. This model allows to simulate the interplay between reef habitat dynamics over the past 140 million years and dispersal, shaping lineage diversification history and global assemblage composition of over 6000 tropical reef fish species. Global trait distribution data of tropical reef fish are used to evaluate the congruence between simulations and observations.
Giulia Francesca Azzurra Donati
eawag
giulia.donati@eawag.ch
BIODIVERSITY
DISPERSAL
ECOLOGY
REEF FISH
TRAITS
ODbL with Database Contents License (DbCL)
Eng
MD_CharacterSetCode_utf8
-160.5813217163086
179.0593032836914
-27.60323689456202
29.000934035030202
CSV
TXT
SHP
RDS
R
https://www.envidat.ch/dataset/dispersal-prevalence-fish-traits-assemblages
HTTPS
DATASET METADATA
information
https://www.envidat.ch/dataset/6b06ad48-bd85-47a8-b478-0850b6def1a4/resource/f554c199-621c-4c60-9566-e3ae1d9479b0/download/fishnet_gaspar_code.csv
HTTPS
GLOBAL SPECIES DISTRIBUTION OF TROPICAL REEF FISH SPECIES
download
https://www.envidat.ch/dataset/6b06ad48-bd85-47a8-b478-0850b6def1a4/resource/f895d8b6-3eff-4479-892b-8cc86b476a22/download/d_param_sim.txt
HTTPS
DISPERSAL PARAMETER VALUE D PER SIMULATION
download
https://www.envidat.ch/dataset/6b06ad48-bd85-47a8-b478-0850b6def1a4/resource/471350ea-cbf8-409e-a8cc-55a84fe4a8cd/download/matrix_sim_sprichness.txt
HTTPS
GLOBAL SIMULATED DISTRIBUTION OF SPECIES UNDER A RANGE OF DISPERSAL PARAMETER VALUES
download
https://www.envidat.ch/dataset/6b06ad48-bd85-47a8-b478-0850b6def1a4/resource/7b6a4981-0f00-432c-9ed8-502c43126613/download/grid_4326_files.zip
HTTPS
CORAL REEF GRID CELLS (SHAPE, DBF, ETC. FILES)
download
https://www.envidat.ch/dataset/6b06ad48-bd85-47a8-b478-0850b6def1a4/resource/a14c6b25-180d-42d8-a863-e13574487a03/download/coast_files.zip
HTTPS
GLOBAL COAST FILES FROM HTTPS://WWW.NGDC.NOAA.GOV/MGG/SHORELINES/GSHHS.HTML
download
https://www.envidat.ch/dataset/6b06ad48-bd85-47a8-b478-0850b6def1a4/resource/3b9df6ee-3cc3-4760-a51c-8241db1fa78c/download/rates.rds
HTTPS
SIMULATED RATES OF SPECIATION AND EXTINCTION UNDER A RANGE OF DISPERSAL PARAMETERS.
download
https://www.envidat.ch/dataset/6b06ad48-bd85-47a8-b478-0850b6def1a4/resource/95d1d60f-7dc9-4c51-992e-baaca842c296/download/cong_sim_obs_trait_prop.rdata
HTTPS
download
https://www.envidat.ch/dataset/6b06ad48-bd85-47a8-b478-0850b6def1a4/resource/2115cb5b-7557-4897-8892-f109a15eb0c1/download/grid_pl_sim_obs_trait_prop_cong.csv
HTTPS
INPUT FOR THE GLOBAL DISTRIBUTION MAPS FOR PROPORTIONS OF SPECIES RICHNESS FOR (A) SIMULATED DISPERSAL PARAMETER VALUE (B) OBSERVED DISPERSAL-RELATED TRAITS
download
https://www.envidat.ch/dataset/6b06ad48-bd85-47a8-b478-0850b6def1a4/resource/eed003d7-c661-42ab-bafb-c2fd2290d94e/download/donati_et_al_dispersal_global_prevalence_traits_functions.r
HTTPS
FUNCTIONS USED IN R SCRIPTS IN: DONATI ET AL. 2019 "A PROCESS-BASED-MODEL SUPPORTS AN ASSOCIATION BETWEEN # DISPERSAL AND THE PREVALENCE OF SPECIES TRAITS IN TROPICAL REEF FISH ASSEMBLAGES" ACCEPTED IN ECOGRAPHY, AUGUST 2019
download
https://www.envidat.ch/dataset/6b06ad48-bd85-47a8-b478-0850b6def1a4/resource/e00d3cf8-4845-4de0-8eb6-33243506c274/download/donati_et_al_dispersal_global_prevalence_traits_main.r
HTTPS
DONATI ET AL. MAIN SCRIPT
download
https://www.envidat.ch/dataset/6b06ad48-bd85-47a8-b478-0850b6def1a4/resource/c0870690-1143-4ac8-957a-2bfd2d6c96e3/download/donati_et_al_dispersal_global_prevalence_traits_figures_main_text.r
HTTPS
MAIN TEXT FIGURES
download
https://www.envidat.ch/dataset/6b06ad48-bd85-47a8-b478-0850b6def1a4/resource/2946e2c8-9f5c-4ed8-bce2-13069fcb6faf/download/donati_et_al_dispersal_global_prevalence_traits_figures_supp_mat.r
HTTPS
SUPPLEMENTARY MATERIAL APPENDIX 1 FIGURES
download
https://www.envidat.ch/dataset/6b06ad48-bd85-47a8-b478-0850b6def1a4/resource/a5227230-5514-4bdc-b81d-b38d5aaea5cb/download/sp_ecological_trait_data.csv
HTTPS
TROPICAL REEF FISH TRAIT DATA
download