Simulated and observed prevalence of dispersal-related traits in tropical reef fish assemblages worldwide

This dataset contains all data and R codes (R Development Core Team, https://www.R-project.org) used in the following publication: Donati GFA, Parravicini V, Leprieur F, Hagen O, Gaboriau T, Heine C, Kulbicki M, Rolland J, Salamin N, Albouy C, Pellissier L. "A process-based model supports an association between dispersal and the prevalence of species traits in tropical reef fish assemblages" accepted by Ecography in August 2019. When using this data and R scripts the above publication should be cited.

The interaction of habitat dynamics with species dispersal abilities could generate gradients in species diversity and prevalence of life-history and ecological traits, when the latter are associated with dispersal potential. In this dataset, we use a spatial mechanistic model of speciation, extinction and dispersal, constrained by a dispersal parameter. This model allows to simulate the interplay between reef habitat dynamics over the past 140 million years and dispersal, shaping lineage diversification history and global assemblage composition of over 6000 tropical reef fish species. Global trait distribution data of tropical reef fish are used to evaluate the congruence between simulations and observations.

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Citation:

Giulia Francesca Azzurra Donati; Valeriano Parravicini; Fabien Leprieur; Oskar Hagen; Theo Gaboriau; Christian Heine; Michel Kulbicki; Jonathan Rolland; Nicolas Salamin; Camille Albouy; Loic Pellissier (2019). Simulated and observed prevalence of dispersal-related traits in tropical reef fish assemblages worldwide. EnviDat. doi:10.16904/envidat.85.

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Metadata

Field Values
DOI 10.16904/envidat.85
Authors
  • Name: Giulia Francesca Azzurra Donati  Email: giulia.donatifoo(at)usys.ethz.ch  ORCID: 0000-0002-5954-3283  Affiliation: ETH Zürich  Additional Affiliation : WSL  DataCRediT: Validation, Curation, Software, Publication
  • Name: Valeriano Parravicini  Email: valeriano.parravicinifoo(at)gmail.com  ORCID: 0000-0002-3408-1625  Affiliation: CRIOBE, USR 3278 CNRS-EPHE-UPVD, LABEX ‘CORAIL’, University of Perpignan, 66860 Perpignan, France  Additional Affiliation : CESAB-FRB, Immeuble Henri Poincaré, Domaine du Petit Arbois, FR-13857 Aix-en-Provence cedex 3, France  DataCRediT: Collection, Validation, Curation, Publication
  • Name: Fabien Leprieur  Email: fabien.leprieurfoo(at)umontpellier.fr  ORCID: 0000-0001-6869-342X  Affiliation: MARBEC, Université de Montpellier, CNRS, Ifremer, IRD, Montpellier, France  Additional Affiliation : Institut Universitaire de France, Paris, France  DataCRediT: Publication, Supervision
  • Name: Oskar Hagen  Email: oskar.hagenfoo(at)usys.ethz.ch  ORCID: 0000-0002-7931-6571  Affiliation: WSL  Additional Affiliation : ETH  DataCRediT: Validation, Curation, Software
  • Name: Theo Gaboriau  Email: theogaboriaufoo(at)gmail.com  ORCID: 0000-0001-7530-2204  Affiliation: Department of Computational Biology, University of Lausanne, 1015 Lausanne, Switzerland.  Additional Affiliation : Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland.  Additional Affiliation : MARBEC, Université de Montpellier, CNRS, Ifremer, IRD, Montpellier, France  DataCRediT: Validation, Curation, Software
  • Name: Christian Heine  Email: chheifoo(at)mensa.uberspace.de  Affiliation: EarthByte Group, The University of Sydney, Australia. Now: Upstream International New Ventures, Shell International Exploration & Production, The Hague, The Netherlands.  DataCRediT: Collection
  • Name: Michel Kulbicki  Email: michel.kulbickifoo(at)ird.fr  ORCID: 0000-0003-1258-5061  Affiliation: Institut pour la Recherche en Développement, UR UMR “Entropie” -Labex Corail- Université de Perpignan- 66000-Perpignan- France.  DataCRediT: Collection, Supervision
  • Name: Jonathan Rolland  Email: jonathan.rollandfoo(at)yahoo.fr  ORCID: 0000-0002-7141-0870  Affiliation: Department of Computational Biology, University of Lausanne, 1015 Lausanne, Switzerland.  Additional Affiliation : Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland.  DataCRediT: Publication, Supervision
  • Name: Nicolas Salamin  Email: nicolas.salaminfoo(at)unil.ch  ORCID: 0000-0002-3963-4954  Affiliation: Department of Computational Biology, University of Lausanne, 1015 Lausanne, Switzerland.  Additional Affiliation : Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland.  DataCRediT: Publication, Supervision
  • Name: Camille Albouy  Email: albouycamillefoo(at)gmail.com  ORCID: 0000-0003-1629-2389  Affiliation: ETH  Additional Affiliation : WSL  Additional Affiliation : IFREMER, unité Ecologie et Modèles pour l’Halieutique, rue de l’Ile d’Yeu, BP21105, 44311 Nantes cedex 3, France.  DataCRediT: Validation, Curation, Software, Publication, Supervision
  • Name: Loic Pellissier  Email: loic.pellissierfoo(at)usys.ethz.ch  ORCID: 0000-0002-2289-8259  Affiliation: ETH  Additional Affiliation : WSL  DataCRediT: Software, Publication, Supervision
Contact Person Name: Giulia Francesca Azzurra Donati  Email: giulia.donatifoo(at)usys.ethz.ch  Affiliation: ETH Zürich  ORCID: 0000-0002-5954-3283
Subtitles
Publication Publisher: EnviDat  Year: 2019
Dates
  • Type: Created  Date: 2017-01-01
Version 1.0
Type Dataset
General Type Dataset
Language English
Location World
Content License ODbL with Database Contents License (DbCL)    [Open Data]
Last Updated September 13, 2019, 11:28 (CEST)
Created September 9, 2019, 16:15 (CEST)