Simulated and observed prevalence of dispersal-related traits in tropical reef fish assemblages worldwide

This dataset contains all data and R codes (R Development Core Team, https://www.R-project.org) used in the following publication: Donati GFA, Parravicini V, Leprieur F, Hagen O, Gaboriau T, Heine C, Kulbicki M, Rolland J, Salamin N, Albouy C, Pellissier L. "A process-based model supports an association between dispersal and the prevalence of species traits in tropical reef fish assemblages" accepted by Ecography in August 2019. When using this data and R scripts the above publication should be cited.

The interaction of habitat dynamics with species dispersal abilities could generate gradients in species diversity and prevalence of life-history and ecological traits, when the latter are associated with dispersal potential. In this dataset, we use a spatial mechanistic model of speciation, extinction and dispersal, constrained by a dispersal parameter. This model allows to simulate the interplay between reef habitat dynamics over the past 140 million years and dispersal, shaping lineage diversification history and global assemblage composition of over 6000 tropical reef fish species. Global trait distribution data of tropical reef fish are used to evaluate the congruence between simulations and observations.

Funding Information:

This work was supported by:
  • FNS and ANR (Grant/Award: Project ‘REEFISH’ no. 310030E‐164294)

Related Publications

Citation:

Donati, Giulia Francesca Azzurra; Parravicini, Valeriano; Leprieur, Fabien; Hagen, Oskar; Gaboriau, Theo; Heine, Christian; Kulbicki, Michel; Rolland, Jonathan; Salamin, Nicolas; Albouy, Camille; Pellissier, Loic (2019). Simulated and observed prevalence of dispersal-related traits in tropical reef fish assemblages worldwide. EnviDat. doi:10.16904/envidat.85.

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Metadata

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DOI 10.16904/envidat.85
Publication State Published
Authors
  • Given Name: Giulia Francesca Azzurra  Family Name: Donati  Email: giulia.donatifoo(at)usys.ethz.ch  ORCID: 0000-0002-5954-3283  Affiliation: ETH Zürich  Additional Affiliation : WSL  DataCRediT: Validation, Curation, Software, Publication
  • Given Name: Valeriano  Family Name: Parravicini  Email: valeriano.parravicinifoo(at)gmail.com  ORCID: 0000-0002-3408-1625  Affiliation: CRIOBE, USR 3278 CNRS-EPHE-UPVD, LABEX ‘CORAIL’, University of Perpignan, 66860 Perpignan, France  Additional Affiliation : CESAB-FRB, Immeuble Henri Poincaré, Domaine du Petit Arbois, FR-13857 Aix-en-Provence cedex 3, France  DataCRediT: Collection, Validation, Curation, Publication
  • Given Name: Fabien  Family Name: Leprieur  Email: fabien.leprieurfoo(at)umontpellier.fr  ORCID: 0000-0001-6869-342X  Affiliation: MARBEC, Université de Montpellier, CNRS, Ifremer, IRD, Montpellier, France  Additional Affiliation : Institut Universitaire de France, Paris, France  DataCRediT: Publication, Supervision
  • Given Name: Oskar  Family Name: Hagen  Email: oskar.hagenfoo(at)usys.ethz.ch  ORCID: 0000-0002-7931-6571  Affiliation: WSL  Additional Affiliation : ETH  DataCRediT: Validation, Curation, Software
  • Given Name: Theo  Family Name: Gaboriau  Email: theogaboriaufoo(at)gmail.com  ORCID: 0000-0001-7530-2204  Affiliation: Department of Computational Biology, University of Lausanne, 1015 Lausanne, Switzerland.  Additional Affiliation : Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland.  Additional Affiliation : MARBEC, Université de Montpellier, CNRS, Ifremer, IRD, Montpellier, France  DataCRediT: Validation, Curation, Software
  • Given Name: Christian  Family Name: Heine  Email: chheifoo(at)mensa.uberspace.de  Affiliation: EarthByte Group, The University of Sydney, Australia. Now: Upstream International New Ventures, Shell International Exploration & Production, The Hague, The Netherlands.  DataCRediT: Collection
  • Given Name: Michel  Family Name: Kulbicki  Email: michel.kulbickifoo(at)ird.fr  ORCID: 0000-0003-1258-5061  Affiliation: Institut pour la Recherche en Développement, UR UMR “Entropie” -Labex Corail- Université de Perpignan- 66000-Perpignan- France.  DataCRediT: Collection, Supervision
  • Given Name: Jonathan  Family Name: Rolland  Email: jonathan.rollandfoo(at)yahoo.fr  ORCID: 0000-0002-7141-0870  Affiliation: Department of Computational Biology, University of Lausanne, 1015 Lausanne, Switzerland.  Additional Affiliation : Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland.  DataCRediT: Publication, Supervision
  • Given Name: Nicolas  Family Name: Salamin  Email: nicolas.salaminfoo(at)unil.ch  ORCID: 0000-0002-3963-4954  Affiliation: Department of Computational Biology, University of Lausanne, 1015 Lausanne, Switzerland.  Additional Affiliation : Swiss Institute of Bioinformatics, Quartier Sorge, 1015 Lausanne, Switzerland.  DataCRediT: Publication, Supervision
  • Given Name: Camille  Family Name: Albouy  Email: albouycamillefoo(at)gmail.com  ORCID: 0000-0003-1629-2389  Affiliation: ETH  Additional Affiliation : WSL  Additional Affiliation : IFREMER, unité Ecologie et Modèles pour l’Halieutique, rue de l’Ile d’Yeu, BP21105, 44311 Nantes cedex 3, France.  DataCRediT: Validation, Curation, Software, Publication, Supervision
  • Given Name: Loic  Family Name: Pellissier  Email: loic.pellissierfoo(at)usys.ethz.ch  ORCID: 0000-0002-2289-8259  Affiliation: ETH  Additional Affiliation : WSL  DataCRediT: Software, Publication, Supervision
Contact Person Given Name: Giulia Francesca Azzurra  Family Name: Donati  Email: giulia.donatifoo(at)usys.ethz.ch  Affiliation: ETH Zürich  ORCID: 0000-0002-5954-3283
Subtitles
Publication Publisher: EnviDat  Year: 2019
Dates
  • Type: Created  Date: 2017-01-01
Version 1.0
Type Dataset
General Type Dataset
Language English
Location World
Content License ODbL with Database Contents License (DbCL)    [Open Data]
Last Updated November 3, 2019, 20:54 (CET)
Created September 9, 2019, 16:15 (CEST)

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