Changes
On March 5, 2024 at 8:16:24 AM UTC, Markus Schlegel:
-
Changed value of field
related_publications
toSchlegel, M., Treindl, A. D., Panziera, J., Zengerer, V., Zani, D., Brännhage, J., & Gross, A. (2024). A case study on the application of spore sampling for the monitoring of macrofungi. Molecular Ecology Resources. [https://doi.org/10.1111/1755-0998.13941](https://doi.org/10.1111/1755-0998.13941)
in Supporting information for case study on the application of spore sampling for the monitoring of macrofungi
f | 1 | { | f | 1 | { |
2 | "author": "[{\"given_name\": \"Markus\", \"name\": \"Schlegel\", | 2 | "author": "[{\"given_name\": \"Markus\", \"name\": \"Schlegel\", | ||
3 | \"email\": \"markus.schlegel@wsl.ch\", \"data_credit\": | 3 | \"email\": \"markus.schlegel@wsl.ch\", \"data_credit\": | ||
4 | [\"collection\", \"validation\", \"curation\", \"software\", | 4 | [\"collection\", \"validation\", \"curation\", \"software\", | ||
5 | \"publication\", \"supervision\"], \"identifier\": | 5 | \"publication\", \"supervision\"], \"identifier\": | ||
6 | \"0000-0003-3453-4783\", \"affiliation\": \"WSL\"}, {\"given_name\": | 6 | \"0000-0003-3453-4783\", \"affiliation\": \"WSL\"}, {\"given_name\": | ||
7 | \"Artemis\", \"name\": \"Treindl\", \"email\": | 7 | \"Artemis\", \"name\": \"Treindl\", \"email\": | ||
8 | \"artemis.treindl@wsl.ch\", \"data_credit\": [\"validation\", | 8 | \"artemis.treindl@wsl.ch\", \"data_credit\": [\"validation\", | ||
9 | \"publication\"], \"identifier\": \"\", \"affiliation\": \"WSL\"}, | 9 | \"publication\"], \"identifier\": \"\", \"affiliation\": \"WSL\"}, | ||
10 | {\"given_name\": \"Jenny\", \"name\": \"Panziera\", \"email\": | 10 | {\"given_name\": \"Jenny\", \"name\": \"Panziera\", \"email\": | ||
11 | \"jenny.panziera@wsl.ch\", \"data_credit\": [\"publication\", | 11 | \"jenny.panziera@wsl.ch\", \"data_credit\": [\"publication\", | ||
12 | \"curation\", \"collection\", \"validation\"], \"identifier\": \"\", | 12 | \"curation\", \"collection\", \"validation\"], \"identifier\": \"\", | ||
13 | \"affiliation\": \"WSL\"}, {\"given_name\": \"Veronika\", \"name\": | 13 | \"affiliation\": \"WSL\"}, {\"given_name\": \"Veronika\", \"name\": | ||
14 | \"Zengerer\", \"email\": \"veronika.zengerer@wsl.ch\", | 14 | \"Zengerer\", \"email\": \"veronika.zengerer@wsl.ch\", | ||
15 | \"data_credit\": [\"collection\", \"validation\", \"publication\"], | 15 | \"data_credit\": [\"collection\", \"validation\", \"publication\"], | ||
16 | \"identifier\": \"\", \"affiliation\": \"WSL\"}, {\"given_name\": | 16 | \"identifier\": \"\", \"affiliation\": \"WSL\"}, {\"given_name\": | ||
17 | \"Deborah\", \"name\": \"Zani\", \"email\": \"deborah.zani@wsl.ch\", | 17 | \"Deborah\", \"name\": \"Zani\", \"email\": \"deborah.zani@wsl.ch\", | ||
18 | \"data_credit\": [\"validation\", \"software\", \"publication\"], | 18 | \"data_credit\": [\"validation\", \"software\", \"publication\"], | ||
19 | \"identifier\": \"\", \"affiliation\": \"WSL\"}, {\"given_name\": | 19 | \"identifier\": \"\", \"affiliation\": \"WSL\"}, {\"given_name\": | ||
20 | \"Jonas\", \"name\": \"Br\\u00e4nnhage\", \"email\": | 20 | \"Jonas\", \"name\": \"Br\\u00e4nnhage\", \"email\": | ||
21 | \"jonas.braennhage@wsl.ch\", \"data_credit\": [\"collection\", | 21 | \"jonas.braennhage@wsl.ch\", \"data_credit\": [\"collection\", | ||
22 | \"validation\", \"publication\"], \"identifier\": \"\", | 22 | \"validation\", \"publication\"], \"identifier\": \"\", | ||
23 | \"affiliation\": \"WSL\"}, {\"given_name\": \"Andrin\", \"name\": | 23 | \"affiliation\": \"WSL\"}, {\"given_name\": \"Andrin\", \"name\": | ||
24 | \"Gross\", \"email\": \"andrin.gross@wsl.ch\", \"data_credit\": | 24 | \"Gross\", \"email\": \"andrin.gross@wsl.ch\", \"data_credit\": | ||
25 | [\"collection\", \"validation\", \"publication\", \"supervision\"], | 25 | [\"collection\", \"validation\", \"publication\", \"supervision\"], | ||
26 | \"identifier\": \"0000-0002-2489-8105\", \"affiliation\": \"WSL\"}]", | 26 | \"identifier\": \"0000-0002-2489-8105\", \"affiliation\": \"WSL\"}]", | ||
27 | "author_email": null, | 27 | "author_email": null, | ||
28 | "creator_user_id": "141eecba-cfa0-435a-abe3-dbfe05201c21", | 28 | "creator_user_id": "141eecba-cfa0-435a-abe3-dbfe05201c21", | ||
29 | "date": "[{\"date\": \"2018-10-05\", \"date_type\": \"created\", | 29 | "date": "[{\"date\": \"2018-10-05\", \"date_type\": \"created\", | ||
30 | \"end_date\": \"2019-11-12\"}, {\"date\": \"2018-10-05\", | 30 | \"end_date\": \"2019-11-12\"}, {\"date\": \"2018-10-05\", | ||
31 | \"date_type\": \"collected\", \"end_date\": \"2019-11-12\"}]", | 31 | \"date_type\": \"collected\", \"end_date\": \"2019-11-12\"}]", | ||
32 | "doi": "10.16904/envidat.434", | 32 | "doi": "10.16904/envidat.434", | ||
33 | "funding": "[{\"grant_number\": \"16.0100.PJ / R203-0209\", | 33 | "funding": "[{\"grant_number\": \"16.0100.PJ / R203-0209\", | ||
34 | \"institution\": \"Swiss Federal Office for the Environment\", | 34 | \"institution\": \"Swiss Federal Office for the Environment\", | ||
35 | \"institution_url\": \"https://www.bafu.admin.ch\"}]", | 35 | \"institution_url\": \"https://www.bafu.admin.ch\"}]", | ||
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38 | "isopen": true, | 38 | "isopen": true, | ||
39 | "language": "en", | 39 | "language": "en", | ||
40 | "license_id": "cc-by-sa", | 40 | "license_id": "cc-by-sa", | ||
41 | "license_title": "Creative Commons Attribution Share-Alike | 41 | "license_title": "Creative Commons Attribution Share-Alike | ||
42 | (CC-BY-SA)", | 42 | (CC-BY-SA)", | ||
43 | "license_url": "https://creativecommons.org/licenses/by-sa/4.0/", | 43 | "license_url": "https://creativecommons.org/licenses/by-sa/4.0/", | ||
44 | "maintainer": | 44 | "maintainer": | ||
45 | s.schlegel@wsl.ch\",\"given_name\":\"Markus\",\"name\":\"Schlegel\"}", | 45 | s.schlegel@wsl.ch\",\"given_name\":\"Markus\",\"name\":\"Schlegel\"}", | ||
46 | "maintainer_email": null, | 46 | "maintainer_email": null, | ||
47 | "metadata_created": "2023-10-02T16:33:37.182679", | 47 | "metadata_created": "2023-10-02T16:33:37.182679", | ||
n | 48 | "metadata_modified": "2024-03-05T08:15:36.212244", | n | 48 | "metadata_modified": "2024-03-05T08:16:24.796279", |
49 | "name": | 49 | "name": | ||
50 | nformation-for-case-study-on-the-application-of-spore-sampling-for-t", | 50 | nformation-for-case-study-on-the-application-of-spore-sampling-for-t", | ||
51 | "notes": "Resources associated with the manuscript *A case study on | 51 | "notes": "Resources associated with the manuscript *A case study on | ||
52 | the application of spore sampling for the monitoring of macrofungi* | 52 | the application of spore sampling for the monitoring of macrofungi* | ||
53 | ([Schlegel et al. | 53 | ([Schlegel et al. | ||
54 | 2024](https://doi.org/10.1111/1755-0998.13941)).\n\nAirborne | 54 | 2024](https://doi.org/10.1111/1755-0998.13941)).\n\nAirborne | ||
55 | environmental DNA (eDNA) monitoring of fungi was evaluated on a | 55 | environmental DNA (eDNA) monitoring of fungi was evaluated on a | ||
56 | species-rich grassland site. Extensive fruiting body surveys yielded | 56 | species-rich grassland site. Extensive fruiting body surveys yielded | ||
57 | 29 waxcap and clavarioid species, 19 of which were also detectable in | 57 | 29 waxcap and clavarioid species, 19 of which were also detectable in | ||
58 | air eDNA. The analysis indicates that spores of locally occurring | 58 | air eDNA. The analysis indicates that spores of locally occurring | ||
59 | fruiting bodies were detected, in addition to a large diversity of | 59 | fruiting bodies were detected, in addition to a large diversity of | ||
60 | common fungal species, while rare and threatened species were | 60 | common fungal species, while rare and threatened species were | ||
61 | under-represented in the air.\n\n*Version 1* of the dataset was | 61 | under-represented in the air.\n\n*Version 1* of the dataset was | ||
62 | submitted during the review phase. *Version 2* contains minor changes | 62 | submitted during the review phase. *Version 2* contains minor changes | ||
63 | and clarifications, and is up to date with the [published | 63 | and clarifications, and is up to date with the [published | ||
64 | t?doi=10.1111%2F1755-0998.13941&file=men13941-sup-0001-AppendixS1.pdf) | 64 | t?doi=10.1111%2F1755-0998.13941&file=men13941-sup-0001-AppendixS1.pdf) | ||
65 | of the study.\n\nThe contents of the ZIP archive:\n\n* analysis | 65 | of the study.\n\nThe contents of the ZIP archive:\n\n* analysis | ||
66 | scripts in [R-Markdown](https://rmarkdown.rstudio.com) format, | 66 | scripts in [R-Markdown](https://rmarkdown.rstudio.com) format, | ||
67 | including the rendered PDF output with figures and tables (*analysis* | 67 | including the rendered PDF output with figures and tables (*analysis* | ||
68 | directory)\n* eDNA sample metadata (*amplicon_meta*) and results of | 68 | directory)\n* eDNA sample metadata (*amplicon_meta*) and results of | ||
69 | the amplicon clustering (*amplicon_data*) and the source code of the | 69 | the amplicon clustering (*amplicon_data*) and the source code of the | ||
70 | pipeline (*amplicon_pipeline*)\n* positions of all fruiting body | 70 | pipeline (*amplicon_pipeline*)\n* positions of all fruiting body | ||
71 | groups found in the surveys (3838 GPS points) (*surveys*)\n* positions | 71 | groups found in the surveys (3838 GPS points) (*surveys*)\n* positions | ||
72 | of the spore traps, taxonomy of studied grassland fungi and red-list | 72 | of the spore traps, taxonomy of studied grassland fungi and red-list | ||
73 | species, and many more resources\n\nPlease refer to `README.pdf` | 73 | species, and many more resources\n\nPlease refer to `README.pdf` | ||
74 | inside the archive for a complete description of the file structure | 74 | inside the archive for a complete description of the file structure | ||
75 | and information on how to reproduce the analyses.", | 75 | and information on how to reproduce the analyses.", | ||
76 | "num_resources": 2, | 76 | "num_resources": 2, | ||
77 | "num_tags": 5, | 77 | "num_tags": 5, | ||
78 | "organization": { | 78 | "organization": { | ||
79 | "approval_status": "approved", | 79 | "approval_status": "approved", | ||
80 | "created": "2018-05-18T09:12:30.577470", | 80 | "created": "2018-05-18T09:12:30.577470", | ||
81 | "description": "We study the relationship between threatened | 81 | "description": "We study the relationship between threatened | ||
82 | species and their habitat with the objective to develop evidence-based | 82 | species and their habitat with the objective to develop evidence-based | ||
83 | instruments for conservation. The viability of populations of habitat | 83 | instruments for conservation. The viability of populations of habitat | ||
84 | specialists is often limited due to restricted availability of | 84 | specialists is often limited due to restricted availability of | ||
85 | suitable habitat or discontinuous distribution. We focus on selected | 85 | suitable habitat or discontinuous distribution. We focus on selected | ||
86 | animal species of conservation concern (forest birds, bats, forest | 86 | animal species of conservation concern (forest birds, bats, forest | ||
87 | insects) and analyse species-habitat relationships at a scale ranging | 87 | insects) and analyse species-habitat relationships at a scale ranging | ||
88 | from single subpopulations to entire metapopulations. We strive | 88 | from single subpopulations to entire metapopulations. We strive | ||
89 | towards standardised recording of elusive species with novel | 89 | towards standardised recording of elusive species with novel | ||
90 | techniques, assessing environmental variables and combining these | 90 | techniques, assessing environmental variables and combining these | ||
91 | field data with data from remote sensing. We determine limiting | 91 | field data with data from remote sensing. We determine limiting | ||
92 | factors (habitat, climate, resources) and predict species occurrence | 92 | factors (habitat, climate, resources) and predict species occurrence | ||
93 | and habitat suitability with modelling techniques.\r\n\r\nThese models | 93 | and habitat suitability with modelling techniques.\r\n\r\nThese models | ||
94 | allow to predict species occurrence patterns and to delineate | 94 | allow to predict species occurrence patterns and to delineate | ||
95 | evidence-based priority areas for conservation. Our long-term | 95 | evidence-based priority areas for conservation. Our long-term | ||
96 | collaboration with federal and cantonal stakeholders of forest and | 96 | collaboration with federal and cantonal stakeholders of forest and | ||
97 | nature conservation enables the combination of research results with | 97 | nature conservation enables the combination of research results with | ||
98 | conservation requirements (e.g. species action plans, forest | 98 | conservation requirements (e.g. species action plans, forest | ||
99 | biodiversity expert panel, scientific counsel for bat protection). | 99 | biodiversity expert panel, scientific counsel for bat protection). | ||
100 | While we investigate complete distribution ranges in bats, we focus on | 100 | While we investigate complete distribution ranges in bats, we focus on | ||
101 | forest habitats in birds and insects given the large extent and high | 101 | forest habitats in birds and insects given the large extent and high | ||
102 | importance of forests for biodiversity conservation in Switzerland.", | 102 | importance of forests for biodiversity conservation in Switzerland.", | ||
103 | "id": "32672ec5-c180-471e-92f7-ef58e00eb1fb", | 103 | "id": "32672ec5-c180-471e-92f7-ef58e00eb1fb", | ||
104 | "image_url": "2018-07-10-090115.162284LogoWSL.svg", | 104 | "image_url": "2018-07-10-090115.162284LogoWSL.svg", | ||
105 | "is_organization": true, | 105 | "is_organization": true, | ||
106 | "name": "conservation-biology", | 106 | "name": "conservation-biology", | ||
107 | "state": "active", | 107 | "state": "active", | ||
108 | "title": "Conservation Biology", | 108 | "title": "Conservation Biology", | ||
109 | "type": "organization" | 109 | "type": "organization" | ||
110 | }, | 110 | }, | ||
111 | "owner_org": "32672ec5-c180-471e-92f7-ef58e00eb1fb", | 111 | "owner_org": "32672ec5-c180-471e-92f7-ef58e00eb1fb", | ||
112 | "private": false, | 112 | "private": false, | ||
113 | "publication": "{\"publication_year\": \"2023\", \"publisher\": | 113 | "publication": "{\"publication_year\": \"2023\", \"publisher\": | ||
114 | \"EnviDat\"}", | 114 | \"EnviDat\"}", | ||
115 | "publication_state": "published", | 115 | "publication_state": "published", | ||
116 | "related_datasets": "* [ITS barcode sequences of studied grassland | 116 | "related_datasets": "* [ITS barcode sequences of studied grassland | ||
117 | ps://www.ncbi.nlm.nih.gov/nuccore/?term=OP538697%3AOP538830%5Baccn%5D) | 117 | ps://www.ncbi.nlm.nih.gov/nuccore/?term=OP538697%3AOP538830%5Baccn%5D) | ||
118 | (GenBank accessions OP538697-OP538830)\r\n* [raw sequencing data for | 118 | (GenBank accessions OP538697-OP538830)\r\n* [raw sequencing data for | ||
119 | this study](https://www.ncbi.nlm.nih.gov/bioproject/PRJNA994926) (NCBI | 119 | this study](https://www.ncbi.nlm.nih.gov/bioproject/PRJNA994926) (NCBI | ||
120 | BioProject PRJNA994926)", | 120 | BioProject PRJNA994926)", | ||
121 | "related_publications": "Schlegel, M., Treindl, A. D., Panziera, J., | 121 | "related_publications": "Schlegel, M., Treindl, A. D., Panziera, J., | ||
122 | Zengerer, V., Zani, D., Br\u00e4nnhage, J., & Gross, A. (2024). A case | 122 | Zengerer, V., Zani, D., Br\u00e4nnhage, J., & Gross, A. (2024). A case | ||
123 | study on the application of spore sampling for the monitoring of | 123 | study on the application of spore sampling for the monitoring of | ||
124 | macrofungi. Molecular Ecology Resources. | 124 | macrofungi. Molecular Ecology Resources. | ||
t | 125 | https://doi.org/10.1111/1755-0998.13941", | t | 125 | rg/10.1111/1755-0998.13941](https://doi.org/10.1111/1755-0998.13941)", |
126 | "relationships_as_object": [], | 126 | "relationships_as_object": [], | ||
127 | "relationships_as_subject": [], | 127 | "relationships_as_subject": [], | ||
128 | "resource_type": "dataset", | 128 | "resource_type": "dataset", | ||
129 | "resource_type_general": "dataset", | 129 | "resource_type_general": "dataset", | ||
130 | "resources": [ | 130 | "resources": [ | ||
131 | { | 131 | { | ||
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134 | "created": "2023-10-03T09:33:24.248776", | 134 | "created": "2023-10-03T09:33:24.248776", | ||
135 | "description": "This ZIP archive contains the data and source | 135 | "description": "This ZIP archive contains the data and source | ||
136 | code necessary to reproduce the analyses for the manuscript \"A case | 136 | code necessary to reproduce the analyses for the manuscript \"A case | ||
137 | study on the application of spore sampling for the monitoring of | 137 | study on the application of spore sampling for the monitoring of | ||
138 | fungi\". Please refer to README.pdf inside the archive for more | 138 | fungi\". Please refer to README.pdf inside the archive for more | ||
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166 | code necessary to reproduce the analyses for the manuscript \"A case | 166 | code necessary to reproduce the analyses for the manuscript \"A case | ||
167 | study on the application of spore sampling for the monitoring of | 167 | study on the application of spore sampling for the monitoring of | ||
168 | macrofungi\". Please refer to README.pdf inside the archive for more | 168 | macrofungi\". Please refer to README.pdf inside the archive for more | ||
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194 | "spatial_info": "Switzerland", | 194 | "spatial_info": "Switzerland", | ||
195 | "state": "active", | 195 | "state": "active", | ||
196 | "subtitle": "", | 196 | "subtitle": "", | ||
197 | "tags": [ | 197 | "tags": [ | ||
198 | { | 198 | { | ||
199 | "display_name": "AIR SAMPLING", | 199 | "display_name": "AIR SAMPLING", | ||
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218 | }, | 218 | }, | ||
219 | { | 219 | { | ||
220 | "display_name": "MONITORING", | 220 | "display_name": "MONITORING", | ||
221 | "id": "c5b72e0c-e21f-4255-bfac-78d7688e0307", | 221 | "id": "c5b72e0c-e21f-4255-bfac-78d7688e0307", | ||
222 | "name": "MONITORING", | 222 | "name": "MONITORING", | ||
223 | "state": "active", | 223 | "state": "active", | ||
224 | "vocabulary_id": null | 224 | "vocabulary_id": null | ||
225 | }, | 225 | }, | ||
226 | { | 226 | { | ||
227 | "display_name": "SPORE DISPERSAL", | 227 | "display_name": "SPORE DISPERSAL", | ||
228 | "id": "eb753e9f-5df4-4c3a-ab60-778104acc9ae", | 228 | "id": "eb753e9f-5df4-4c3a-ab60-778104acc9ae", | ||
229 | "name": "SPORE DISPERSAL", | 229 | "name": "SPORE DISPERSAL", | ||
230 | "state": "active", | 230 | "state": "active", | ||
231 | "vocabulary_id": null | 231 | "vocabulary_id": null | ||
232 | } | 232 | } | ||
233 | ], | 233 | ], | ||
234 | "title": "Supporting information for case study on the application | 234 | "title": "Supporting information for case study on the application | ||
235 | of spore sampling for the monitoring of macrofungi", | 235 | of spore sampling for the monitoring of macrofungi", | ||
236 | "type": "dataset", | 236 | "type": "dataset", | ||
237 | "url": null, | 237 | "url": null, | ||
238 | "version": "1.0" | 238 | "version": "1.0" | ||
239 | } | 239 | } |