Changes
On October 3, 2023 at 12:01:32 PM UTC, Markus Schlegel:
-
Renamed resource Data files and analysis scripts to Data files and analysis scripts (Version 1) in Supporting information for case study on the application of spore sampling for the monitoring of fungi
f | 1 | { | f | 1 | { |
2 | "author": "[{\"given_name\": \"Markus\", \"name\": \"Schlegel\", | 2 | "author": "[{\"given_name\": \"Markus\", \"name\": \"Schlegel\", | ||
3 | \"email\": \"markus.schlegel@wsl.ch\", \"data_credit\": | 3 | \"email\": \"markus.schlegel@wsl.ch\", \"data_credit\": | ||
4 | [\"collection\", \"validation\", \"curation\", \"software\", | 4 | [\"collection\", \"validation\", \"curation\", \"software\", | ||
5 | \"publication\", \"supervision\"], \"identifier\": | 5 | \"publication\", \"supervision\"], \"identifier\": | ||
6 | \"0000-0003-3453-4783\", \"affiliation\": \"WSL\"}, {\"given_name\": | 6 | \"0000-0003-3453-4783\", \"affiliation\": \"WSL\"}, {\"given_name\": | ||
7 | \"Artemis\", \"name\": \"Treindl\", \"email\": | 7 | \"Artemis\", \"name\": \"Treindl\", \"email\": | ||
8 | \"artemis.treindl@wsl.ch\", \"data_credit\": [\"validation\", | 8 | \"artemis.treindl@wsl.ch\", \"data_credit\": [\"validation\", | ||
9 | \"publication\"], \"identifier\": \"\", \"affiliation\": \"WSL\"}, | 9 | \"publication\"], \"identifier\": \"\", \"affiliation\": \"WSL\"}, | ||
10 | {\"given_name\": \"Jenny\", \"name\": \"Panziera\", \"email\": | 10 | {\"given_name\": \"Jenny\", \"name\": \"Panziera\", \"email\": | ||
11 | \"jenny.panziera@wsl.ch\", \"data_credit\": [\"publication\", | 11 | \"jenny.panziera@wsl.ch\", \"data_credit\": [\"publication\", | ||
12 | \"curation\", \"collection\", \"validation\"], \"identifier\": \"\", | 12 | \"curation\", \"collection\", \"validation\"], \"identifier\": \"\", | ||
13 | \"affiliation\": \"WSL\"}, {\"given_name\": \"Veronika\", \"name\": | 13 | \"affiliation\": \"WSL\"}, {\"given_name\": \"Veronika\", \"name\": | ||
14 | \"Zengerer\", \"email\": \"veronika.zengerer@wsl.ch\", | 14 | \"Zengerer\", \"email\": \"veronika.zengerer@wsl.ch\", | ||
15 | \"data_credit\": [\"collection\", \"validation\", \"publication\"], | 15 | \"data_credit\": [\"collection\", \"validation\", \"publication\"], | ||
16 | \"identifier\": \"\", \"affiliation\": \"WSL\"}, {\"given_name\": | 16 | \"identifier\": \"\", \"affiliation\": \"WSL\"}, {\"given_name\": | ||
17 | \"Deborah\", \"name\": \"Zani\", \"email\": \"deborah.zani@wsl.ch\", | 17 | \"Deborah\", \"name\": \"Zani\", \"email\": \"deborah.zani@wsl.ch\", | ||
18 | \"data_credit\": [\"validation\", \"software\", \"publication\"], | 18 | \"data_credit\": [\"validation\", \"software\", \"publication\"], | ||
19 | \"identifier\": \"\", \"affiliation\": \"WSL\"}, {\"given_name\": | 19 | \"identifier\": \"\", \"affiliation\": \"WSL\"}, {\"given_name\": | ||
20 | \"Jonas\", \"name\": \"Br\\u00e4nnhage\", \"email\": | 20 | \"Jonas\", \"name\": \"Br\\u00e4nnhage\", \"email\": | ||
21 | \"jonas.braennhage@wsl.ch\", \"data_credit\": [\"collection\", | 21 | \"jonas.braennhage@wsl.ch\", \"data_credit\": [\"collection\", | ||
22 | \"validation\", \"publication\"], \"identifier\": \"\", | 22 | \"validation\", \"publication\"], \"identifier\": \"\", | ||
23 | \"affiliation\": \"WSL\"}, {\"given_name\": \"Andrin\", \"name\": | 23 | \"affiliation\": \"WSL\"}, {\"given_name\": \"Andrin\", \"name\": | ||
24 | \"Gross\", \"email\": \"andrin.gross@wsl.ch\", \"data_credit\": | 24 | \"Gross\", \"email\": \"andrin.gross@wsl.ch\", \"data_credit\": | ||
25 | [\"collection\", \"validation\", \"publication\", \"supervision\"], | 25 | [\"collection\", \"validation\", \"publication\", \"supervision\"], | ||
26 | \"identifier\": \"0000-0002-2489-8105\", \"affiliation\": \"WSL\"}]", | 26 | \"identifier\": \"0000-0002-2489-8105\", \"affiliation\": \"WSL\"}]", | ||
27 | "author_email": null, | 27 | "author_email": null, | ||
28 | "creator_user_id": "141eecba-cfa0-435a-abe3-dbfe05201c21", | 28 | "creator_user_id": "141eecba-cfa0-435a-abe3-dbfe05201c21", | ||
29 | "date": "[{\"date\": \"2018-10-05\", \"date_type\": \"created\", | 29 | "date": "[{\"date\": \"2018-10-05\", \"date_type\": \"created\", | ||
30 | \"end_date\": \"2019-11-12\"}, {\"date\": \"2018-10-05\", | 30 | \"end_date\": \"2019-11-12\"}, {\"date\": \"2018-10-05\", | ||
31 | \"date_type\": \"collected\", \"end_date\": \"2019-11-12\"}]", | 31 | \"date_type\": \"collected\", \"end_date\": \"2019-11-12\"}]", | ||
32 | "doi": "10.16904/envidat.434", | 32 | "doi": "10.16904/envidat.434", | ||
33 | "funding": "[{\"grant_number\": \"16.0100.PJ / R203-0209\", | 33 | "funding": "[{\"grant_number\": \"16.0100.PJ / R203-0209\", | ||
34 | \"institution\": \"Swiss Federal Office for the Environment\", | 34 | \"institution\": \"Swiss Federal Office for the Environment\", | ||
35 | \"institution_url\": \"https://www.bafu.admin.ch\"}]", | 35 | \"institution_url\": \"https://www.bafu.admin.ch\"}]", | ||
36 | "groups": [], | 36 | "groups": [], | ||
37 | "id": "5ecb89e0-7abf-42ce-b210-24dcdee781d9", | 37 | "id": "5ecb89e0-7abf-42ce-b210-24dcdee781d9", | ||
38 | "isopen": true, | 38 | "isopen": true, | ||
39 | "language": "en", | 39 | "language": "en", | ||
40 | "license_id": "cc-by-sa", | 40 | "license_id": "cc-by-sa", | ||
41 | "license_title": "Creative Commons Attribution Share-Alike | 41 | "license_title": "Creative Commons Attribution Share-Alike | ||
42 | (CC-BY-SA)", | 42 | (CC-BY-SA)", | ||
43 | "license_url": "https://creativecommons.org/licenses/by-sa/4.0/", | 43 | "license_url": "https://creativecommons.org/licenses/by-sa/4.0/", | ||
44 | "maintainer": "{\"affiliation\": \"\", \"email\": | 44 | "maintainer": "{\"affiliation\": \"\", \"email\": | ||
45 | \"markus.schlegel@wsl.ch\", \"given_name\": \"Markus\", | 45 | \"markus.schlegel@wsl.ch\", \"given_name\": \"Markus\", | ||
46 | \"identifier\": \"\", \"name\": \"Schlegel\"}", | 46 | \"identifier\": \"\", \"name\": \"Schlegel\"}", | ||
47 | "maintainer_email": null, | 47 | "maintainer_email": null, | ||
48 | "metadata_created": "2023-10-02T16:33:37.182679", | 48 | "metadata_created": "2023-10-02T16:33:37.182679", | ||
n | 49 | "metadata_modified": "2023-10-03T11:38:18.791433", | n | 49 | "metadata_modified": "2023-10-03T12:01:32.862911", |
50 | "name": | 50 | "name": | ||
51 | nformation-for-case-study-on-the-application-of-spore-sampling-for-t", | 51 | nformation-for-case-study-on-the-application-of-spore-sampling-for-t", | ||
52 | "notes": "This dataset contains data, analysis source code and other | 52 | "notes": "This dataset contains data, analysis source code and other | ||
53 | resources associated with the manuscript \"A case study on the | 53 | resources associated with the manuscript \"A case study on the | ||
54 | application of spore sampling for the monitoring of | 54 | application of spore sampling for the monitoring of | ||
55 | fungi\".\r\n\r\nPlease refer to `README.pdf` inside the archive for a | 55 | fungi\".\r\n\r\nPlease refer to `README.pdf` inside the archive for a | ||
56 | complete description of the file structure and information on how to | 56 | complete description of the file structure and information on how to | ||
57 | reproduce the analyses.", | 57 | reproduce the analyses.", | ||
58 | "num_resources": 1, | 58 | "num_resources": 1, | ||
59 | "num_tags": 5, | 59 | "num_tags": 5, | ||
60 | "organization": { | 60 | "organization": { | ||
61 | "approval_status": "approved", | 61 | "approval_status": "approved", | ||
62 | "created": "2018-05-18T09:12:30.577470", | 62 | "created": "2018-05-18T09:12:30.577470", | ||
63 | "description": "We study the relationship between threatened | 63 | "description": "We study the relationship between threatened | ||
64 | species and their habitat with the objective to develop evidence-based | 64 | species and their habitat with the objective to develop evidence-based | ||
65 | instruments for conservation. The viability of populations of habitat | 65 | instruments for conservation. The viability of populations of habitat | ||
66 | specialists is often limited due to restricted availability of | 66 | specialists is often limited due to restricted availability of | ||
67 | suitable habitat or discontinuous distribution. We focus on selected | 67 | suitable habitat or discontinuous distribution. We focus on selected | ||
68 | animal species of conservation concern (forest birds, bats, forest | 68 | animal species of conservation concern (forest birds, bats, forest | ||
69 | insects) and analyse species-habitat relationships at a scale ranging | 69 | insects) and analyse species-habitat relationships at a scale ranging | ||
70 | from single subpopulations to entire metapopulations. We strive | 70 | from single subpopulations to entire metapopulations. We strive | ||
71 | towards standardised recording of elusive species with novel | 71 | towards standardised recording of elusive species with novel | ||
72 | techniques, assessing environmental variables and combining these | 72 | techniques, assessing environmental variables and combining these | ||
73 | field data with data from remote sensing. We determine limiting | 73 | field data with data from remote sensing. We determine limiting | ||
74 | factors (habitat, climate, resources) and predict species occurrence | 74 | factors (habitat, climate, resources) and predict species occurrence | ||
75 | and habitat suitability with modelling techniques.\r\n\r\nThese models | 75 | and habitat suitability with modelling techniques.\r\n\r\nThese models | ||
76 | allow to predict species occurrence patterns and to delineate | 76 | allow to predict species occurrence patterns and to delineate | ||
77 | evidence-based priority areas for conservation. Our long-term | 77 | evidence-based priority areas for conservation. Our long-term | ||
78 | collaboration with federal and cantonal stakeholders of forest and | 78 | collaboration with federal and cantonal stakeholders of forest and | ||
79 | nature conservation enables the combination of research results with | 79 | nature conservation enables the combination of research results with | ||
80 | conservation requirements (e.g. species action plans, forest | 80 | conservation requirements (e.g. species action plans, forest | ||
81 | biodiversity expert panel, scientific counsel for bat protection). | 81 | biodiversity expert panel, scientific counsel for bat protection). | ||
82 | While we investigate complete distribution ranges in bats, we focus on | 82 | While we investigate complete distribution ranges in bats, we focus on | ||
83 | forest habitats in birds and insects given the large extent and high | 83 | forest habitats in birds and insects given the large extent and high | ||
84 | importance of forests for biodiversity conservation in Switzerland.", | 84 | importance of forests for biodiversity conservation in Switzerland.", | ||
85 | "id": "32672ec5-c180-471e-92f7-ef58e00eb1fb", | 85 | "id": "32672ec5-c180-471e-92f7-ef58e00eb1fb", | ||
86 | "image_url": "2018-07-10-090115.162284LogoWSL.svg", | 86 | "image_url": "2018-07-10-090115.162284LogoWSL.svg", | ||
87 | "is_organization": true, | 87 | "is_organization": true, | ||
88 | "name": "conservation-biology", | 88 | "name": "conservation-biology", | ||
89 | "state": "active", | 89 | "state": "active", | ||
90 | "title": "Conservation Biology", | 90 | "title": "Conservation Biology", | ||
91 | "type": "organization" | 91 | "type": "organization" | ||
92 | }, | 92 | }, | ||
93 | "owner_org": "32672ec5-c180-471e-92f7-ef58e00eb1fb", | 93 | "owner_org": "32672ec5-c180-471e-92f7-ef58e00eb1fb", | ||
94 | "private": false, | 94 | "private": false, | ||
95 | "publication": "{\"publication_year\": \"2023\", \"publisher\": | 95 | "publication": "{\"publication_year\": \"2023\", \"publisher\": | ||
96 | \"EnviDat\"}", | 96 | \"EnviDat\"}", | ||
97 | "publication_state": "published", | 97 | "publication_state": "published", | ||
98 | "related_datasets": "* [ITS barcode sequences of studied grassland | 98 | "related_datasets": "* [ITS barcode sequences of studied grassland | ||
99 | ps://www.ncbi.nlm.nih.gov/nuccore/?term=OP538697%3AOP538830%5Baccn%5D) | 99 | ps://www.ncbi.nlm.nih.gov/nuccore/?term=OP538697%3AOP538830%5Baccn%5D) | ||
100 | (GenBank accessions OP538697-OP538830)\r\n* [raw sequencing data for | 100 | (GenBank accessions OP538697-OP538830)\r\n* [raw sequencing data for | ||
101 | this study](https://www.ncbi.nlm.nih.gov/bioproject/PRJNA994926) (NCBI | 101 | this study](https://www.ncbi.nlm.nih.gov/bioproject/PRJNA994926) (NCBI | ||
102 | BioProject PRJNA994926)", | 102 | BioProject PRJNA994926)", | ||
103 | "related_publications": "", | 103 | "related_publications": "", | ||
104 | "relationships_as_object": [], | 104 | "relationships_as_object": [], | ||
105 | "relationships_as_subject": [], | 105 | "relationships_as_subject": [], | ||
106 | "resource_type": "dataset", | 106 | "resource_type": "dataset", | ||
107 | "resource_type_general": "dataset", | 107 | "resource_type_general": "dataset", | ||
108 | "resources": [ | 108 | "resources": [ | ||
109 | { | 109 | { | ||
110 | "cache_last_updated": null, | 110 | "cache_last_updated": null, | ||
111 | "cache_url": null, | 111 | "cache_url": null, | ||
112 | "created": "2023-10-03T09:33:24.248776", | 112 | "created": "2023-10-03T09:33:24.248776", | ||
113 | "description": "This ZIP archive contains the data and source | 113 | "description": "This ZIP archive contains the data and source | ||
114 | code necessary to reproduce the analyses for the manuscript \"A case | 114 | code necessary to reproduce the analyses for the manuscript \"A case | ||
115 | study on the application of spore sampling for the monitoring of | 115 | study on the application of spore sampling for the monitoring of | ||
116 | fungi\". Please refer to README.pdf inside the archive for more | 116 | fungi\". Please refer to README.pdf inside the archive for more | ||
117 | information.", | 117 | information.", | ||
118 | "doi": "", | 118 | "doi": "", | ||
119 | "format": "ZIP", | 119 | "format": "ZIP", | ||
120 | "hash": "", | 120 | "hash": "", | ||
121 | "id": "9ac066a9-e65a-4bf9-937e-a43f6aae41e3", | 121 | "id": "9ac066a9-e65a-4bf9-937e-a43f6aae41e3", | ||
n | 122 | "last_modified": "2023-10-03T11:37:07.486000", | n | 122 | "last_modified": "2023-10-03T14:01:32.101000", |
123 | "metadata_modified": "2023-10-03T09:37:08.360508", | 123 | "metadata_modified": "2023-10-03T12:01:32.868693", | ||
124 | "mimetype": "application/zip", | 124 | "mimetype": "application/zip", | ||
125 | "mimetype_inner": null, | 125 | "mimetype_inner": null, | ||
t | 126 | "name": "Data files and analysis scripts", | t | 126 | "name": "Data files and analysis scripts (Version 1)", |
127 | "package_id": "5ecb89e0-7abf-42ce-b210-24dcdee781d9", | 127 | "package_id": "5ecb89e0-7abf-42ce-b210-24dcdee781d9", | ||
128 | "position": 0, | 128 | "position": 0, | ||
129 | "resource_size": "{\"size_value\":\"\",\"size_units\":\"\"}", | 129 | "resource_size": "{\"size_value\":\"\",\"size_units\":\"\"}", | ||
130 | "resource_type": null, | 130 | "resource_type": null, | ||
131 | "restricted": | 131 | "restricted": | ||
132 | {\"level\":\"public\",\"allowed_users\":\"\",\"shared_secret\":\"\"}", | 132 | {\"level\":\"public\",\"allowed_users\":\"\",\"shared_secret\":\"\"}", | ||
133 | "size": 29336906, | 133 | "size": 29336906, | ||
134 | "state": "active", | 134 | "state": "active", | ||
135 | "url": | 135 | "url": | ||
136 | /resource/9ac066a9-e65a-4bf9-937e-a43f6aae41e3/download/suppinfo.zip", | 136 | /resource/9ac066a9-e65a-4bf9-937e-a43f6aae41e3/download/suppinfo.zip", | ||
137 | "url_type": "upload" | 137 | "url_type": "upload" | ||
138 | } | 138 | } | ||
139 | ], | 139 | ], | ||
140 | "spatial": | 140 | "spatial": | ||
141 | mation-for-case-study-on-the-application-of-spore-sampling-for-t\"}}", | 141 | mation-for-case-study-on-the-application-of-spore-sampling-for-t\"}}", | ||
142 | "spatial_info": "Switzerland", | 142 | "spatial_info": "Switzerland", | ||
143 | "state": "active", | 143 | "state": "active", | ||
144 | "subtitle": "", | 144 | "subtitle": "", | ||
145 | "tags": [ | 145 | "tags": [ | ||
146 | { | 146 | { | ||
147 | "display_name": "AIR SAMPLING", | 147 | "display_name": "AIR SAMPLING", | ||
148 | "id": "95a28d6c-b86c-4eb4-ba62-459765611cea", | 148 | "id": "95a28d6c-b86c-4eb4-ba62-459765611cea", | ||
149 | "name": "AIR SAMPLING", | 149 | "name": "AIR SAMPLING", | ||
150 | "state": "active", | 150 | "state": "active", | ||
151 | "vocabulary_id": null | 151 | "vocabulary_id": null | ||
152 | }, | 152 | }, | ||
153 | { | 153 | { | ||
154 | "display_name": "EDNA", | 154 | "display_name": "EDNA", | ||
155 | "id": "dab1a17e-9bf9-4e0a-9a60-c3ca8f8a9154", | 155 | "id": "dab1a17e-9bf9-4e0a-9a60-c3ca8f8a9154", | ||
156 | "name": "EDNA", | 156 | "name": "EDNA", | ||
157 | "state": "active", | 157 | "state": "active", | ||
158 | "vocabulary_id": null | 158 | "vocabulary_id": null | ||
159 | }, | 159 | }, | ||
160 | { | 160 | { | ||
161 | "display_name": "METABARCODING", | 161 | "display_name": "METABARCODING", | ||
162 | "id": "00af76c6-a1b0-407c-a7f3-898398363cfc", | 162 | "id": "00af76c6-a1b0-407c-a7f3-898398363cfc", | ||
163 | "name": "METABARCODING", | 163 | "name": "METABARCODING", | ||
164 | "state": "active", | 164 | "state": "active", | ||
165 | "vocabulary_id": null | 165 | "vocabulary_id": null | ||
166 | }, | 166 | }, | ||
167 | { | 167 | { | ||
168 | "display_name": "MONITORING", | 168 | "display_name": "MONITORING", | ||
169 | "id": "c5b72e0c-e21f-4255-bfac-78d7688e0307", | 169 | "id": "c5b72e0c-e21f-4255-bfac-78d7688e0307", | ||
170 | "name": "MONITORING", | 170 | "name": "MONITORING", | ||
171 | "state": "active", | 171 | "state": "active", | ||
172 | "vocabulary_id": null | 172 | "vocabulary_id": null | ||
173 | }, | 173 | }, | ||
174 | { | 174 | { | ||
175 | "display_name": "SPORE DISPERSAL", | 175 | "display_name": "SPORE DISPERSAL", | ||
176 | "id": "eb753e9f-5df4-4c3a-ab60-778104acc9ae", | 176 | "id": "eb753e9f-5df4-4c3a-ab60-778104acc9ae", | ||
177 | "name": "SPORE DISPERSAL", | 177 | "name": "SPORE DISPERSAL", | ||
178 | "state": "active", | 178 | "state": "active", | ||
179 | "vocabulary_id": null | 179 | "vocabulary_id": null | ||
180 | } | 180 | } | ||
181 | ], | 181 | ], | ||
182 | "title": "Supporting information for case study on the application | 182 | "title": "Supporting information for case study on the application | ||
183 | of spore sampling for the monitoring of fungi", | 183 | of spore sampling for the monitoring of fungi", | ||
184 | "type": "dataset", | 184 | "type": "dataset", | ||
185 | "url": null, | 185 | "url": null, | ||
186 | "version": "1.0" | 186 | "version": "1.0" | ||
187 | } | 187 | } |